Henry A.
Nkabyo
a,
Barbara
Procacci
b,
Simon B.
Duckett
b and
Klaus R.
Koch
*a
aDepartment of Chemistry and Polymer Science, Stellenbosch University, Private Bag X1 Matieland, 7602, South Africa. E-mail: krk@sun.ac.za; Fax: +2721 808 3342; Tel: +2721 808 3020
bCentre for Hyperpolarisation in Magnetic Resonance, Department of Chemistry, York Science Park, University of York, Heslington, York YO10 5NY, UK
First published on 7th November 2019
Upon ex situ UV-visible light irradiation, complex cis-bis(N,N-diethyl-N′-naphthoylthioureato)-palladium(II), cis-[Pd(L-κS,O)2], undergoes isomerization in acetonitrile-d3 and chloroform-d to yield trans-[Pd(L-κS,O)2] which then rearranges thermally to novel trans-[Pd(L-κS,N)2] prior to reverting thermally to the cis isomer in the absence of light. The thermal isomerization rate is highly solvent dependent and harnessed to enable each of these three geometric isomers to be isolated and characterized by 1H NMR spectroscopy, X-ray crystallography, melting point and thermal analysis. The formation of the trans-[Pd(L-κS,N)2] isomer as part of this isomerization has only been observed with the sterically demanding cis–bis(N,N-diethyl-N′-(naphthoylthioureato)palladium(II) precursor based on our knowledge to date. In situ irradiation with monochromatic laser light (λ = 355 nm) coupled to 1H NMR spectroscopy of solutions of cis-[Pd(L-κS,O)2] in acetonitrile-d3 supports the ex situ photo-induced isomerization experiments.
In general, these deceptively simple N,N-dialkyl-N′-acylthiourea molecules (HL) tend to overwhelmingly, although not exclusive, coordinate to divalent transition metal ions M2+ such as Cu(II),17 Ni(II),18 Pd(II),7,8,19 Pt(II),20–23 with loss of a proton in a stable monobasic bidentate κ-S,O mode of coordination, to give square-planar cis-[M(L-κS,O)2] type complexes. In the case of trivalent transition metal ions such as Rh(III),13 Co(III)24,25 and Ru(III)26 coordination of HL generally leads to mainly octahedral fac-[M(L-κS,O)3].
As part of our interest, particularly in cis-[M(Ln-κS,O)2] complexes of the noble metals M = Pt(II) & Pd(II) (‘n’ denoting variously substituted HL ligands) in the context of potential hydrometallurgical potential applications,3 we were intrigued by the rarity of the corresponding trans-[M(Ln-κS,O)2] isomers obtained from N,N-dialkyl-N′-acylthioureas. In fact, the first example of a trans-S,O coordinated Pt(II) complex, trans-bis(N,N-(di-n)-butyl-N′-naphthoylthioureato)platinum(II), was fortuitously isolated in low yields of ca. 15% by Koch et al., more than 2 decades ago.27 Despite numerous attempts it was not possible, to reliably prepare trans-[Pt/Pd(L-κS,O)2] complexes by conventional means with different ligands of this motif.5,6 Nevertheless, the synthesis of a few presumably thermodynamically less stable trans-[Cu(L-κS,O)2] complexes has subsequently been achieved, as characterized by X-ray diffraction.28–31
Recently, Koch et al. demonstrated that the key to the formation of the geometrical trans-[Pt/Pd(Ln-κS,O)2] isomers, is in fact a facile photo-induced isomerization of the cis-[Pt/Pd(Ln-κS,O)2] complexes in acetonitrile-d3 if irradiated with intense polychromatic light of wavelength <450 nm.32–35 Under such conditions cis-[Pt(Ln-κS,O)2] and cis-[Pd(Ln-κS,O)2] type complexes cleanly isomerize to the analogous trans isomers at room temperature.32,35 The extent of, and the relative rates of cis → trans, isomerization of these cis complexes were found to be dependent on the nature of the ligand, the polarity of the organic solvent, as well as the wavelength of the irradiating light. Moreover, the isomerization is reversible in the absence of light, complete albeit slow trans → cis reversion takes place at room temperature (Scheme 1).32,33 Based on these observations, we developed a simple means of preparing and isolating several examples of pure trans-[Pt(Ln-κS,O)2] and trans-[Pd(Ln-κS,O)2] by photo-irradiation of their cis precursors in conjunction with simple vapour-diffusion crystallization methodology.33,35
In this paper, we show that similar photo-induced isomerization of cis-[Pd(L-κS,O)2] in acetonitrile-d3 leads not only to the expected trans-[Pd(L-κS,O)2] isomer but also, and remarkably, to the unprecedented trans-[Pd(L-κS,N)2] isomer, which could be isolated and characterized by exploiting their reactivity differences in chloroform-d or acetonitrile-d3 solution, in the absence of light.
Good crops of crystals of trans-[Pd(L-κS,O)2] could reproducibly be isolated from acetonitrile solutions of the cis-[Pd(L-κS,O)2] complex, following irradiation by a procedure we recently reported33,35 involving continuous irradiation with polychromatic light and in situ crystallization by vapour diffusion using diethylether at room temperature.
In the case of complexes derived from N,N-diethyl-N′-1-naphthoylthiourea however, mixtures of cis-[Pd(L-κS,O)2] and trans-[Pd(L-κS,O)2] are obtained depending on the irradiation time. The unprecedented trans-[Pd(L-S,N)2] isomer is also seen in these solutions. Prolonged irradiation of a more concentrated solution in acetonitrile for ca. 4 days, and subsequent crystallization, results in the isolation of a second crop of yellow crystals due to trans-[Pd(L-κS,N)2]. The isolated crystals of the cis-[Pd(L-κS,O)2], trans-[Pd(L-κS,O)2] and trans-[Pd(L-κS,N)2] isomers are not easily distinguishable visually, all being yellowish and rod-shaped (see insert in Fig. 2). After careful physical separation though, they could be distinguished by their melting points. The pure cis-[Pd(L-κS,O)2] isomer exhibits a low melting point of between 157 and 159 °C when compared to both of the other forms; trans-[Pd(L-κS,O)2] (174–176 °C) and trans-[Pd(L-κS,N)2] (187–189 °C). The relatively higher melting point of the trans isomer is consistent with the situation reported in the literature for related complexes.33,35
Differential scanning calorimetry (DSC) confirms the differing melting points of the three geometric isomers over the temperature range 25–220 °C under a heating rate of 10 °C min−1 and a dinitrogen atmosphere (Fig. 2). The red DSC curve, obtained from a sample of pure cis-[Pd(L-κS,O)2], shows a single sharp endothermic event at 153.8 °C, corresponding to the melting of this complex. The blue curve reflects a mixture of the trans-[Pd(L-κS,O)2] and trans-[Pd(L-κS,N)2] that was obtained after evaporation of a previously irradiated solution of the cis-[Pd(L-κS,O)2] complex. Now two endothermic events are seen, in the range 160–200 °C, which confirms both isomers are present. The additional 154 °C event, suggests the occurrence of thermal trans → cis isomerization during this observation. These endothermic events are consistent with the conventionally measured melting points of the isolated trans-[Pd(L-κS,O)2] (174–176 °C) and trans-[Pd(L-κS,N)2] (187–189 °C). The broad endothermic peak (blue line) at ca. 183 °C is ascribed to the thermal interconversion process that leads to the more stable cis-[Pd(L-κS,O)2] form.
The single crystal X-ray diffraction structures of all three cis-[Pd(L-κS,O)2], trans-[Pd(L-κS,O)2] and trans-[Pd(L-κS,N)2] complexes are shown in Fig. 3. Their refinement data is given in Table 1. The cis-[Pd(L-κS,O)2] complex (Fig. 3(a)) crystallizes in the orthorhombic space group Pbcn, with the palladium atom coordinating to the sulfur and oxygen atoms in a cis-κS,O manner. There are no significant differences in the average Pd–S (2.234(1) Å) and Pd–O (2.023(2) Å) bond lengths, in this isomer as compared to those of the corresponding cis–bis(N,N-dialkyl-N′-benzoylthioureato)palladium(II) complex,33–35 suggesting that the presence of the naphthoyl-moiety does not significantly affect distribution of delocalized electrons density in the six-membered chelate ring of the cis-[Pd(L-κS,O)2] isomer. Closer inspection of the latter crystal structure shows a detectable deviation from square planarity of the six-membered chelate ring, resulting in the S(1A)–Pd1–O(1B) and S(1B)–Pd1–O(1A) bond angles being 177.99 (7)° in cis-[Pd(L-κS,O)2] compared to that of cis–bis(N,N-dialkyl-N′-benzoylthioureato)palladium(II) of 179.09 (8)° respectively.33 In cis-[Pd(L-κS,O)2], the two naphthoyl groups are not coplanar with the six-membered chelate rings reflected by differences in the torsion angles C(12B)–N(1B)–C(11B)–C(1B) −172.5(2)° compared to C(12A)–N(1A)–C(11A)–C(1A) −167.3 (3)°, presumably due to the bulky nature of the naphthoyl-moiety. The crystal packing of cis-[Pd(L-κS,O)2] shows intermolecular π–π interactions of the naphthoyl rings (Fig. S1(a)†) with weak intermolecular C–H interactions between the naphthoyl moieties and the methyl hydrogen atoms of the thioamidic group (Fig. S1†).
Compound | cis-[Pd(L-κS,O)2] | trans-[Pd(L-κS,O)2] | trans-[Pd(L-κS,N)2] |
Empirical formula | C32H34N4O2PdS2 | C32H34N4O2PdS2 | C32H34N4O2PdS2 |
Formula weight | 677.11 | 677.11 | 677.11 |
Crystal system | Orthorhombic | Monoclinic | Monoclinic |
Space group | Pcbn | P21/c | P21/n |
a (Å) | 43.068(8) | 11.640(15) | 12.471(3) |
b (Å) | 9.323(18) | 8.444(11) | 7.397(2) |
c (Å) | 15.204(3) | 14.795(19) | 15.924(5) |
α/° | 90.000 | 90.000 | 90.000 |
β/° | 90 | 96.132(2) | 92.975(4) |
γ/° | 90.000 | 90.000 | 90.000 |
Z | 8 | 2 | 2 |
T/K | 100 | 100 | 100 |
μ/mm−1 | 0.781 | 0.824 | 0.812 |
Independent reflections | 7077 | 3344 | 3387 |
R int | 0.080 | 0.017 | 0.045 |
Final R1, wR2 [I > 2σ(I)] | 0.0490, 0.1043, 1.04 | 0.0245, 0.0668, 1.07 | 0.0245, 0.0668, 1.07 |
The molecular structure of the trans-[Pd(L-κS,O)2] complex (Fig. 3(b)) shows bidentate trans-κS,O coordination of the ligand to Pd(II) in the six-membered Pd1–S1–C12–N1–C11–O1 chelate ring. The trans-[Pd(L-κS,O)2] complex crystallizes in a monoclinic space group, P21/c. This structure is complicated by crystallographic disorder at two positions corresponding to one of the ethyl moieties linked to section C12–N1B of the chelate ring. The average Pd–S [2.281(12) Å] bond length in the trans-[Pd(L-κS,O)2] isomer is slightly longer than that of the cis-[Pd(L-κS,O)2] [Pd–S = 2.234(1) Å] complex, while the corresponding and Pd–O [1.9789(13) Å] bonds are shorter [Pd–O = 2.023(2) Å], respectively. This may be ascribed to the higher trans-influence of the sulfur donor atom,36 leading to the expected longer Pd–S and shorter Pd–O bond distances, in the trans-[Pd(L-κS,O)2] isomer. The trans-[Pd(L-κS,O)2] structure assumes an almost perfectly square planar configuration, represented by S1–Pd1–S1 and O1–Pd1–O1 bond angles of 180°. The two naphthoyl-moieties are not coplanar with the six-membered chelate system as evident by the torsion angles C12A–N1A–C11–C1 = 171.19°, C12B–C–11B–C11–C1 = −175.00°.
The novel trans-[Pd(L-κS,N)2] complex crystallizes in a monoclinic space group P21/n shown in Fig. 3(c). The structure illustrates a rare four-membered trans-S,N chelate ring, which is almost perfectly square-planar as indicated by the S1–Pd1–S(1_a) bond angles of 180°. The naphthoyl-moieties are not coplanar with the four-membered chelate, with torsion angles of S1–C12–N2–C11 = 138.93°. The Pd–S bonds are significantly longer (2.325(3) Å) compared to both the trans-[Pd(L-κS,O)2] (2.281(12) Å) and cis-[Pd(L-κS,O)2] (2.234(1) Å) isomers. The longer Pd–S bonds are ascribed to a higher trans influence of the sulfur donor atom relative to either oxygen or nitrogen which consequently weakens the Pd–S bonds, as well as the effect of the four membered chelate ring imposes. A shortening of the uncoordinated CO bond distance (1.225(4) Å) in the trans-[Pd(L-κS,N)2] complex is also observed compared to the average bond distances of the coordinated C–O bond in either cis-[Pd(L-κS,O)2] (1.272(4) Å) or trans-[Pd(L-κS,O)2] [1.282(2) Å]. This is probably due to extensive delocalization of the oxygen donor electrons into the six-membered chelate rings in both cis-[Pd(L-κS,O)2] and trans-[Pd(L-κS,O)2], a situation that is absent in the trans-[Pd(L-κS,N)2] complex, resulting in the double bond character in the uncoordinated C
O bond being similar to that in the free ligand.
Fig. 4 shows a series of 1H NMR spectra of cis-[Pd(L-κS,O)2] and trans-[Pd(L-κS,O)2] in CDCl3 solution. As described above, these two complexes are readily distinguished by inspection of the aromatic region of the spectrum in CDCl3. The corresponding chemical shifts are almost identical in CD3CN. Upon short periods of ex situ irradiation of a solution of cis-[Pd(L-κS,O)2] the signals for trans-[Pd(L-κS,O)2] become readily visible.
Interestingly, if a solution of pure trans-[Pd(L-κS,O)2] (Fig. 4(c)) is left in the dark for more than 25 min at 298 K, peaks due to the cis-[Pd(L-κS,O)2] emerge in addition to several new peaks, most clearly indicated by the doublet at δ 8.48 ppm. This doublet is shielded relative to H8 of trans-[Pd(L-κS,O)2] and accompanied by other new resonances in the aliphatic region at δ 3.45 and δ 1.05 ppm. These are due to –N(CH2) and –CH3 protons of an –N(ethyl)2 moiety and have similar appearance to those of cis- and trans-[Pd(L-κS,O)2], respectively. These new peaks are assigned to novel trans-[Pd(L-κS,N)2]. This isomer forms slowly from trans-[Pd(L-κS,O)2] in the absence of light and eventually reverts to cis-[Pd(L-κS,O)2]. This behaviour has not previously been observed for any of the related Pt(II) and Pd(II) complexes with a variety of N,N-dialkyl-N′-benzoylthiourea ligands.32–35
To investigate further the evolution of the intermediate trans-[Pd(L-κS,N)2] we recorded a series of time-arrayed 1H NMR spectra on a sample prepared from an isolated mixture of trans-[Pd(L-κS,O)2] and trans-[Pd(L-κS,N)2] containing a trace of residual cis-[Pd(L-κS,O)2]. The resulting 1H NMR spectra in chloroform-d (Fig. 5) indicate that cis-[Pd(L-κS,O)2] reforms essentially over 370 minutes in the dark via presumably the conversion of trans-[Pd(L-κS,O)2] into the intermediate trans-[Pd(L-κS,N)2] as in Scheme 2. It is important to note that the reaction trans-[Pd(L-κS,N)2] → cis-[Pd(L-κS,O)2] takes ca. 84 h to completion, suggestive of an associative reaction pathway, as shown in the NMR spectra in Fig. S2.†
Collectively, these data indicate that the cis-[Pd(L-κS,O)2] converts photo-chemically into trans-[Pd(L-κS,O)2] to reach a photo-stationary state in acetonitrile-d3, during continuous in situ laser irradiation (Scheme 2). After switching off the laser, a thermal rearrangement of the trans-[Pd(L-κS,O)2] to the trans-[Pd(L-κS,N)2] species takes place, which in turn reverts slowly and cleanly, back to the thermodynamically more stable cis-[Pd(L-κS,O)2] complex.
Unfortunately, due to the need of using optically dilute solutions for in situ laser irradiation, as well as due to the low overall solubility of the cis-[Pd(L-κS,N)2] complex in acetonitrile-d3 (typically at best ∼0.1 mg ml−1) the S/N ratio of these time arrayed 1H NMR spectra precluded a more quantitative analysis of the rate of formation of the trans-[Pd(L-κS,N)2] complex by such NMR experiments. Nevertheless, the trans → cis isomerization via the trans-[Pd(L-κS,N)2] species in the dark, monitored by 1H NMR in a more concentrated solution of a mixture of trans-[Pd(L-κS,O)2], trans-[Pd(L-κS,N)2] in the presence of a small quantity of cis-[Pd(L-κS,O)2] in chloroform-d (Fig. 5), qualitatively correspond to the trends observed in Fig. 6. The relative rates of the trans → cis reactions in the dark in chloroform-d are several orders of magnitude lower compared to the corresponding processes in acetonitrile-d3; this also nicely illustrates the role of the solvent in these isomerization reactions. In chloroform-d the trans-[Pd(L-κS,N)2] complex persists in solution for more than ca. 400 min, by which time the trans-[Pd(L-κS,O)2] has completely disappeared from solution (Fig. 5 and S2†).
It is worth emphasising that this mechanism has so far only been observed for the cis–bis(N,N-dialkyl-N′-naphthoylthioureato)palladium(II) complex but not for the analogous cis–bis(N,N-diethyl-N′-benzoylthioureato)palladium(II) complexes.33–35
Fig. 7(b) shows a series of chromatograms obtained after repeated injections of 20 μL aliquots of a solution of the precursor cis-[Pd(L-κS,O)2] in acetonitrile which has undergone 30 min of ex situ irradiation with polychromatic light. Injection was now achieved by means of an auto-sampler at 13 minutes intervals and the sample was stored at room temperature in the dark. The resulting RP-HPLC trends as a function of time show that at the first time point, the three species already exist in solution; cis-[Pd(L-κS,O)2] dominates with small amounts of the photo-induced trans-[Pd(L-κS,O)2] and a trace of the trans-[Pd(L-κS,N)2] being detected. Repeated injections of this solution show chromatograms in which the peak areas of both trans-[Pd(L-κS,O)2] and trans-[Pd(L-κS,N)2] initially increase slightly over the first 26 min. This is followed by a gradual decrease in the peak area for trans-[Pd(L-κS,O)2] with concomitant increase in the peak due to trans-[Pd(L-κS,N)2], reaching a zenith at ca. 60 min after which it too falls off reaching zero at about 325 min. The concomitant growth of the cis-[Pd(L-κS,O)2] peak tracks these changes, until after ca. 6 h full reversal is indicated.
These peak intensities were monitored at λ = 262 nm where the absorbance of the three species is very similar, although not identical (Fig. S3†). In this way qualitative relative rates of reversion of the trans-[Pd(L-κS,O)2] and trans-[Pd(L-κS,N)2] → cis-[Pd(L-κS,O)2] isomer in the dark can be extracted by taking the peak area ratios of trans-[Pd(L-κS,O)2]/cis-[Pd(L-κS,O)2] and trans-[Pd(L-κS,N)2]/cis-[Pd(L-κS,O)2] as a function of time (Fig. 7(c)). It is clear that these data match the trends observed in the NMR studies of Fig. 1, 6 and S2.†
The unambiguous molecular compostion of the three isomers (and their relative retention times) was confirmed by RP-HPLC coupled to an ESI-TOF-mass-spectrometer (Fig. S4(a)†). This gives three total-ion chromatographic peaks at 1.4 min, 1.8 min, and 2.8 min, all of which have identical low resolution m/z values of 677.12. Fig. S4(b–d)† shows the high resolution ESI mass spectra of the three isomeric species. The most intense set of peaks observed are in the m/z range 673.123–683.125 which corresponds exactly to the parent molecular ion [C32H34N4O2PdS2 + H]+, taking isotopic elemental distribution into account. Similarly, high resolution mass spectra of the trans-[Pd(L-κS,O)2] (Fig. S4(c)†) and trans-[Pd(L-κS,N)2] isomers (Fig. S4(d)†) have essentially identical isotopic distibution peak patterns.
In summary the photo-induced isomerization of pure cis-[Pd(L-κS,O)2] in either acetonitrile or chloroform solution results in the fairly rapid formation of a trans-[Pd(L-κS,O)2] complex, and much slower formation of the unprecedented trans-[Pd(L-κS,N)2] species. This enables the isolation of both the trans-[Pd(L-κS,O)2] and the trans-[Pd(L-κS,N)2] complex in pure form, by careful timing of their crystalization. The relative rate of the in situ laser photo-induced cis-[Pd(L-κS,O)2] → trans-[Pd(L-κS,O)2] isomerism is significantly higher than the formation of the trans-[Pd(L-κS,N)2] complex (Fig. 6(a–c)). The formation of the unusual trans-[Pd(L-κS,N)2] complex not easily prepared by convetional means, appears to result from a thermal trans-[Pd(L-κS,O)2] → trans-[Pd(L-κS,N)2] isomerization. Qualitatively, the rate of thermal trans-[Pd(L-κS,N)2] → cis-[Pd(L-κS,O)2] occurs at a much lower rate at room temperature. Nevertheless both trans-isomers are isolable and stable in the solid state; in organic solvents they slowly and cleanly revert back to the thermodynamically more stable cis precursor in the absence of light.
All available evidence to date indicates that only the cis–bis(N,N-diethyl-N′-(naphthoylthioureato)palladium(II) compound undergoes photo-induced isomerization to give both the trans-[Pd(L-κS,O)2] and trans-[Pd(L-κS,N)2] complexes, and that the reversion reaction in the absence of light proceeds by a more complicated pathway shown in Scheme 2, in contrast to the simpler bimolecular process known for all the related cis-[M(Ln-κS,O)2] complexes of the noble metals M = Pt(II) & Pd(II), derived from N,N-dialkyl-N′-benzoylthiourea ligands.32–35 to date (Scheme 1).
The cis-[Pd(L-κS,O)2], trans-[Pd(L-κS,O)2] and the trans-[Pd(L-κS,N)2] have been characterized by means of single crystals X-ray diffraction structure determination thereby illustrating a series of three interconverting geometric isomers, which show significantly different melting points as confirmed by DSC analysis. Both 1H NMR spectroscopy and reversed phase-HPLC allow for the estimation of the relative rates of the photo-induced cis → trans process, as well as its thermal reversion in the dark. The relative rate of trans-[Pd(L-κS,O)2] → cis-[Pd(L-κS,O)2] and trans-[Pd(L-κS,N)2] → cis-[Pd(L-κS,O)2] complexes differ substantially in the solvents chloroform and acetonitrile. It appears that for these complexes, the reversion of the trans-[Pd(L-κS,O)2] proceeds very slowly in chloroform, most probably via the intermediate formation of the trans-[Pd(L-κS,N)2] species en route to the cis-[Pd(L-κS,O)2] complex. In acetonitrile, the corresponding thermal isomerization occurs significantly more rapidly at room temperature thereby implicating possible CH3CN coordination and a role for the trans effect, not conceivable in chloroform solution. Significantly in the absence of light, given enough time both trans-isomers cleanly revert back to the cis-[Pd(Lκ-S,O)2] precursor.
All LC-MS experiments were performed using a Waters Synapt G2 mass spectrometer equipped with an ESI source (Waters, Milford, MA, USA). All UHPLC-ESI-MS experiments were carried out in the positive mode using a Waters BEH C18 (2.1 × 100 mm) column with the mobile phase composed of acetonitrile and 0.1% formic acid under isocratic conditions.
Footnote |
† Electronic supplementary information (ESI) available. CCDC 1403030, 1403031 and 1403032 for cis-[Pd(L-κS,O)2], trans-[Pd(L-S,N)2] and trans-[Pd(L-κS,O)2] respectively. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/c9dt03672e |
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