Rosa M.
Gomila
a and
Antonio
Frontera
*b
aServeis Cientificotècnics, University of Balearic Islands, E-07122, Palma, Spain
bDepartament de Química, Universitat de les Illes Balears, Crta de Valldemossa km 7.5, 07122 Palma de Mallorca, Baleares, Spain. E-mail: toni.frontera@uib.es
First published on 31st March 2020
This manuscript combines a search in the Cambridge Structural Database (CSD) and theoretical density functional theory (DFT) calculations to analyse the existence and importance of charge assisted pnictogen and halogen bonds involving halophosphonium cations. Trivalent pnictogen atoms typically have three σ-holes and are able to establish up to three pnictogen bonds (PnBs). In phosphonium salts, the phosphorus atom forms four covalent bonds and, consequently, four σ-holes are located at the extension of these bonds. Therefore, up to four charge assisted PnBs can be formed between these holes and the counterions or any electron rich atom. The covalent bond arrangement around the phosphorus atom is similar to that around tetravalent tetrel atoms and converts into a similar pattern of σ-hole interactions. We have found and described this type of charge assisted pnictogen bond in various halophosphonium crystal structures. Moreover, the competition of charge assisted PnBs with charge assisted halogen bonds (HaBs) has been also studied both theoretically and by analysing the CSD.
Attention to PnBs from the scientific community has increased in recent years.2,15,16 For instance, triple-pnictogen bonding has been used as a tool for supramolecular assembly17 and phosphonium–stibonium and bis-stibonium cations have been utilized as pnictogen-bonding catalysts for the hydrogenation of quinolines.18 Moreover, Matile's group has used pnictogen-bonding interactions for transmembrane anion transport and compared their characteristics with those of their chalcogen- and halogen-bonding analogs.19 The positive electrostatic potential energy value at the σ-holes increases going from the top to the bottom of group 15 because the polarizability of the pnicogen atom increases. In fact, pnictogen bonds involving antimony have materialized as the most promising ones for incorporation into functional systems.20
The utilization of the heavier pnictogen atoms to establish effective and competitive interaction in solution is a good strategy to succeed in the fields of supramolecular chemistry and catalysis.21 Another strategy is the utilization of tetravalent phosphorus cations as PnB donor sites (R4P+⋯:A). Tetrasubstituted phosphorus atoms should be able to afford particularly strong charge-assisted pnictogen bonds. Moreover, the presence of up to four σ-holes is expected for phosphorus, consequently enabling up to four PnBs to be established. For the chalcogen elements, the formation of three charge assisted chalcogen bonds involving sulfur,22,23 selenium and tellurium has been studied theoretically and analysed using the CSD.24 Moreover, charge assisted ChBs have been described in several biological systems like S-adenosyl-L-methionine dependent methyl-transferases25 and α-glucosidase inhibitors.24 Similarly, charge assisted halogen bonds have been described in halonium salts forming two charge assisted halogen bonds with anions26 or Lewis bases27,28 opposite to the two covalent bonds.
In this manuscript, we report a combined Cambridge Structural Database (CSD)29 and DFT study (PBE1PBE-D3/def2-TZVP) to analyse the existence and relevance of charge assisted PnBs in crystal structures and analyse their energetic features in some model compounds. Since we use several halophosphonium salts (X4P+, X = F, Cl, Br and I), we also analyse their competition with charge assisted HaBs. In particular, we have compared charge assisted PnBs and HaBs by analysing the X-ray structures present in the CSD and also by computing the energetic and geometric features of two families of complexes, using halophosphonium tetraborate salts as pnictogen/halogen bond donors and several Lewis bases as σ-hole acceptors (electron donors).
X = Cl | X = Br | X = I |
---|---|---|
BAMSAJ | HUHHUN | AHEMEH |
LUWMIA | YAJTOV | GEKNAM |
LUWNAT | YAJTUB | HEDGAY |
SOZFUI | HEDGEC | |
TCXPHC10 | HEDGIG | |
TECNOE | HUHHOH | |
QIRZOH | ||
QIRZUN |
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Fig. 1 X-ray solid state structures of [(CH3)3XP]+[PnF6]− (X = halogen, Pn = pnictogen) salts. (a) NUWTUW, X = F, (b) DITBIS, X = Cl and (c) RANQON, X = I. Distances in Å. |
It can be observed that for X = F (NUWTUW30) and Cl (DITBIS31), the O-atom belonging to the counterion is located opposite to the P–X bond at a distance that is shorter than the sum of van der Waals radii thus establishing a charge assisted pnictogen bonding interaction. In both structures, the O-atom also interacts with the H-atoms of the methyl groups thus establishing three C–H⋯O H-bonds that are significantly less directional than the PnB (the range of C–H⋯O distances is also indicated in Fig. 1 for both structures). Interestingly, the O⋯P distance is slightly shorter in the NUWTUW30 structure than in the DITBIS one, in agreement with the typical behaviour of σ-hole interactions. That is, with a given electron donor, the strength typically increases as the electron withdrawing ability of X increases. Remarkably, for X = I (RANQON32), the counterion interacts with the I-atom instead of the P-atom, thus forming a charge assisted halogen bond (HaB) instead of a PnB. A likely explanation is that I is the best halogen bond acceptor and the worse electron withdrawing element in the series.
Other examples of charge assisted PnBs in crystal structures involving the σ-hole opposite to the F–P bond are shown in Fig. 2 including also the aforesaid NUWTUW30 structure. Interestingly, it forms two different PnBs in the solid state (see Fig. 2a) that are highly directional and also a remarkable chalcogen bond where the F-atom is located exactly on the extension of the CF3–S bond (179°). Fig. 2 shows two additional examples, one corresponds to the refcode ENUVEQ33 where the O-atom of triflate interacts with the polarized P–F bond and the other one (refcode PAVSEN34) represents an example of an intramolecular charge assisted PnB.
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Fig. 2 X-ray solid state structures as representative examples of highly directional charge assisted PnBs in R3FP+ salts. (a) NUWTUW, (b) ENUVEQ and (c) PAVSEN. Distances in Å. |
We have found seventeen structures of halophosphonium cations in the CSD where the P-atom is at least bonded to three halogen atoms (six for X = Cl, three for X = Br and eight for X = I), which are indicated in Table 1. In all these structures, either the P-atom or the halogen atom exhibits strong and directional charge assisted σ-hole interactions.
Several structures (indicated in bold in Table 1) correspond to tetrahalophosphonium salts that should present four symmetrically distributed σ-holes, as corroborated in Fig. 3a, where the molecular electrostatic potential (MEP) surface of [PCl4]+ is represented. Two of these X4P+ salts (refcodes LUWNAT35 and YAJTOV36) are represented in Fig. 3b and c and it can be observed that one atom of the counterion is indeed located opposite to one of the P–X bonds; however, the distance is very long, thus suggesting a very weak contribution of the PnB interaction. This can be due to the repulsion with the negative belts of the halogen atoms. We have compared the geometric features of these PnBs with those observed in the X-ray structure of [AsCl4]+ and [AsBr4]+ salts (Fig. 3d and e). Remarkably, in the case of [AsX4]+ salts, the PnB distances O⋯As and F⋯As (in IZUXIM37 and XALVOW,38 respectively) are significantly shorter than the sum of their corresponding van der Waals radii and also highly directional. This result reveals the greater ability of As to establish charge assisted PnBs, in line with the typical behaviour described for conventional PnBs involving trivalent pnictogen atoms.
The analysis of the X-ray structures in Table 1 shows that most of these compounds and especially the [RI3P]+ salts have a strong tendency to form three halogen bonds instead of the charge assisted PnB. Three illustrative examples are given in Fig. 4. In BAMSAJ,39 the trichloro-(4-ethoxyphenyl)-phosphonium cation establishes three strongly directional interactions with the chloride counterions with Cl⋯Cl distances that are shorter than the sum of van der Waals radii (ΣvdW = 3.50 Å). Similarly, in both methyl-tri-iodophosphonium (HEDGIG40) and t-butyl-tri-iodophosphonium (HEDGAY40) iodide salts, three short I⋯I halogen bonds are established with short distances (ΣvdW = 3.96 Å), thus confirming the importance of charge assisted halogen bonds in the solid state of these compounds.
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Fig. 4 X-ray solid state structures of [P(X)3R]+ cations. (a) BAMSAJ, X = Cl, (b) HEDGIG, X = I and (c) HEDGAY, X = I. Distances in Å. |
In Fig. 5, we present the MEP surfaces of compounds 1a–4a and in Fig. 6, those of compounds 1b–4b. The MEP values at the σ-holes of P and X for both series “a” and “b” are summarized in Table 2. For the “a” series, the σ-hole at the P-atom is very large for X = F due to the strong electron withdrawing effect of F. Moreover, the electron density is not anisotropic at the F-atom. For the rest of the halogen atoms, the distribution of electron density is anisotropic and the σ-hole slightly increases going from Cl to I. The change is small because the MEP value is largely dominated by the global positive charge of the [X4P]+ moiety. It is interesting to highlight that the size and intensity of the σ-hole at the P-atom significantly decreases going from the lighter to the heaviest halogen atom (see Fig. 5 and Table 2), thus strongly decreasing its ability to participate in noncovalent interactions. For the “b” series, the MEP surfaces evidence the existence of a σ-hole in the X = Cl, Br and I salts with a constant value of +51 kcal mol−1, thus confirming the fact that the cationic nature of the [X4P]+ fragment is masking the polarizability effect in the heavier halogen atoms. In contrast, the MEP value at the P-atom for X = F is very large (Vs,max = 109.2 kcal mol−1) and it significantly decreases going from F to I. This analysis agrees well with the CSD results, since for X = F, pnictogen bonding interactions are common (see Fig. 2); however, for phosphonium cations with heavier halogens, PnBs are rare and HaBs predominate in the solid state. In general, the MEP values are more positive in the “b” series because the counterion [BF4]− is located at a larger distance (longer P⋯B distance) due to the relative orientation of the [X4P]+ and [BF4]− moieties.
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Fig. 5 MEP surfaces of compounds 1a (a), 2a (b), 3a (c) and 4a (d). Energies at selected points of the surface (0.001 a.u.) are given in kcal mol−1. |
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Fig. 6 MEP surfaces of compounds 1b (a), 2b (b), 3b (c) and 4b (d). Energies at selected points of the surface (0.001 a.u.) are given in kcal mol−1. |
Complex | V s,X | V s,P | Complex | V s,X | V s,P |
---|---|---|---|---|---|
1a | 37.0 | 75.3 | 1b | 48.9 | 109.2 |
2a | 47.0 | 48.0 | 2b | 50.8 | 60.8 |
3a | 47.7 | 39.5 | 3b | 51.4 | 48.3 |
4a | 48.9 | 29.5 | 4b | 51.4 | 33.8 |
Complex | X | Y | ΔEa | R | ρ(r) | H(r) |
---|---|---|---|---|---|---|
a For the calculation of the interaction energies, the [X4P+][BF4−] ion pair was considered as a subunit. b The bond paths connect Y to the X-atoms. | ||||||
5a | F | CO | −1.0 | 3.254 | 0.0039 | 0.0013 |
5b | F | CO | −4.1 | 3.335 | 0.0075 | 0.0009 |
6a | F | HCN | −3.5 | 2.923 | 0.0066 | 0.0022 |
6b | F | HCN | −11.7 | 2.905 | 0.0139 | 0.0012 |
7a | F | NH3 | −3.5 | 2.959 | 0.0079 | 0.0020 |
7b | F | NH3 | −23.6 | 1.972 | 0.1091 | −0.0895 |
8a | F | SCN− | −17.4 | 2.853 | 0.0110 | 0.0031 |
8b | F | SCN− | −36.9 | 3.072 | 0.0145 | 0.0006 |
9a | F | Br − | −24.4 | 2.913 | 0.0153 | 0.0023 |
9b | F | Br − | −85.2 | 2.319 | 0.1074 | −0.0600 |
10a | Cl | CO | −1.7 | 3.315 | 0.0067 | 0.0015 |
10b | Cl | CO | −2.0 | 3.943 | 0.0039b | 0.0019 |
11a | Cl | HCN | −4.7 | 3.021 | 0.0104 | 0.0023 |
11b | Cl | HCN | −6.2 | 3.585 | 0.0059b | 0.0015 |
12a | Cl | NH3 | −6.7 | 2.829 | 0.0195 | 0.0015 |
12b | Cl | NH3 | −6.3 | 3.560 | 0.0074b | 0.0013 |
13a | Cl | SCN− | −21.1 | 2.854 | 0.0216 | 0.0016 |
13b | Cl | SCN− | −28.2 | 3.644 | 0.0083b | 0.0015 |
14a | Cl | Br − | −41.4 | 2.637 | 0.0503 | −0.0063 |
14b | Cl | Br − | −49.8 | 2.417 | 0.0889 | −0.0375 |
15a | Br | CO | −2.1 | 3.315 | 0.0084 | 0.0014 |
15b | Br | CO | −1.4 | 3.907 | 0.0032b | 0.0009 |
16a | Br | HCN | −5.1 | 3.009 | 0.0130 | 0.0019 |
16b | Br | HCN | −5.0 | 3.715 | 0.0055b | 0.0011 |
17a | Br | NH3 | −8.6 | 2.729 | 0.0278 | 0.0000 |
17b | Br | NH3 | −5.2 | 3.668 | 0.0071b | 0.0010 |
18a | Br | SCN− | −22.7 | 2.844 | 0.0262 | 0.0002 |
18b | Br | SCN− | −26.1 | 3.758 | 0.0082b | 0.0010 |
19a | Br | Br − | −52.6 | 2.567 | 0.0655 | −0.0138 |
19b | Br | Br − | −45.3 | 2.428 | 0.0862 | −0.0346 |
20a | I | CO | −2.6 | 3.294 | 0.0112 | 0.0013 |
20b | I | CO | −1.8 | 4.108 | 0.0045 | 0.0007 |
21a | I | HCN | −6.0 | 2.978 | 0.0174 | 0.0015 |
21b | I | HCN | −4.0 | 3.854 | 0.0054 | 0.0010 |
22a | I | NH3 | −11.7 | 2.700 | 0.0355 | −0.0028 |
22b | I | NH3 | −4.5 | 3.739 | 0.0074b | 0.0007 |
23a | I | SCN− | −25.1 | 2.855 | 0.0317 | −0.0021 |
23b | I | SCN− | −23.7 | 3.844 | 0.0086b | 0.0009 |
24a | I | Br − | −61.6 | 2.662 | 0.0639 | −0.0159 |
24b | I | Br − | −38.0 | 3.728 | 0.0118b | 0.0006 |
The interaction energies and distances for complexes 5–24 are summarized in Table 3. The energetic results indicate that the CO complexes are the weakest ones in both series and the Br− complexes are the strongest ones. In fact, the equilibrium distances in some CO complexes are longer than the sum of van der Waals radii (complexes 10b, 15b and 20b) It is interesting to highlight that the interaction energies for the “b” series (PnBs) are larger (in absolute value) than those for the “a” series for X = F and X = Cl apart from complex 12 (Y = NH3). This result strongly agrees with the MEP analysis, since the MEP at the σ-hole at the P-atom is more intense in compounds 1b and 2b than that at the σ-hole at the X-atom in compounds 1a and 2a. For X = Br and I, the charge assisted HaBs are stronger than the charge assisted PnBs in line with the MEP surface analysis. For the “a” series, the interaction strengthens going from X = F to X = I, as is common for HaBs,1 and for the “b” series, the interaction weakens going from F to I, in line with the lower polarization of the P–X bond for the heavier halogens. As expected, the interaction energies involving the anionic donors are stronger than those with neutral donors.
The geometries of some representative complexes in both series are given in Fig. 7 and 8, where it can be observed that the tetrahedral geometry of the X4P+ unit is not changed upon complexation. However, in some complexes in the “b” series, nucleophilic attack of the electron rich atom on the P-atom occurs, changing from tetrahedral to trigonal pyramidal. These complexes are 7b (Y = NH3), 9b, 14b and 19b (Y = Br−). The geometries of three of them are given in Fig. 9. It can be observed that a covalent bond instead of a non-covalent bond is formed in these complexes, thus explaining the large interaction energies, especially for the Br− complexes. It is worthy to comment that in case of the NH3 molecule, the nucleophilic attack only occurs in the complex with the [X4P]+[BF4]− salt, in good agreement with the MEP surface plot shown in Fig. 6a that shows a very large MEP value at the phosphorus atom's σ-hole.
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Fig. 7 PBE0-D3/def2-TZVP optimized geometries of complexes 8a (a), 12a (b), 15a (c) and 21a (d). Distances in Å. |
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Fig. 8 PBE0-D3/def2-TZVP optimized geometries of complexes 6b (a), 10b (b), 17b (c) and 24b (d). Distances in Å. |
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Fig. 9 PBE0-D3/def2-TZVP optimized geometries of complexes 7b (a), 9b (b) and 19b (c). Distances in Å. |
Characterization of the interactions in complexes 5–24 has been carried out using the quantum theory of “atoms-in-molecules” (QTAIM).41 For all complexes in the “a” series, the HaB is characterized by a bond critical point (CP) and bond path connecting the X-atom to the interacting atom of Y (marked in bold in Table 3). For the “b” series, the distribution of bond CPs and bond paths is more complicated. For X = F, the PnB interaction is characterized by a bond CP and bond path interconnecting the P-atom to the electron rich atom of Y. For X = Cl, Br and I, the interaction is characterized by three symmetrically equivalent bond CPs and bond paths connecting Y to three halogen atoms of the X4P+ unit. In these complexes, the complexation is further characterized by three ring CPs and a cage CP as a consequence of the formation of three supramolecular rings and one supramolecular cage (see Fig. 10 for a representative set of complexes for both series). The values of ρ(r) (electron charge density) at the bond CPs that characterize the HaBs in complexes 5a–24a are given in Table 3. The value of ρ(r) at the bond CP correlates well with the interaction energies.42 That is, for a given electron donor (Y), the ρ(r) values increase going from F to I. In contrast, for the “b” series, the values of ρ(r) decrease going from X = F to X = Br ≈ I, thus confirming the fact that PnBs are stronger for X = F and HaBs are stronger for X = I. In order to differentiate covalent and noncovalent interactions, we have also gathered in Table 3 the values of the total energy density [H(r)] at the bond CPs. Positive values of H(r) indicate noncovalent bonding, negative and small values of H(r) are indicative of partial covalent character, and large and negative values of H(r) along with large values of ρ(r) indicate covalent bonding.43,44 Examination of the values of H(r) in Table 3 reveals that most of the complexes are non-covalent in nature. Furthermore, halogen bonded complexes 14a, 22a and 23a present partial covalent character (values in italics in Table 3) in addition to the PnB complexes. The QTAIM analysis also confirms the covalent character of PnB complexes 7b, 9b, 14b and 19b, which presents a trigonal bipyramidal geometry around the P-atom (values in bold in Table 3) since they present large and negative values of H(r). Moreover, the HaB complexes 19a and 24a, involving an anionic electron donor in combination with the heavier halogens Br and I, also exhibit significant covalent character, in line with the strong σ-hole at the halogen atom (see Fig. 5).
Footnote |
† Electronic supplementary information (ESI) available: Cartesian coordinates of all optimized complexes and salts. See DOI:10.1039/d0ce00220h |
This journal is © The Royal Society of Chemistry 2020 |